STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107103192RAR-related orphan receptor C b. (496 aa)    
Predicted Functional Partners:
npas4
Neuronal PAS domain protein 4a.
      
 0.664
nrip1
Nuclear receptor interacting protein 1b.
    
 0.589
uvrag
UV radiation resistance associated gene.
      
 0.577
LOC107097585
Sidoreflexin.
      
 0.560
ENSCVAP00000002779
GPS2_interact domain-containing protein.
    
 0.541
Ncor1
Uncharacterized protein.
    
 0.541
ncor2
Nuclear receptor corepressor 2.
    
 0.541
LOC107091560
Neural retina leucine zipper.
   
  
 0.497
LOC107093492
Uncharacterized protein.
   
 0.429
CLOCK
Clock circadian regulator a.
   
 0.429
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.