STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107090074Activating transcription factor 4a. (439 aa)    
Predicted Functional Partners:
ddit3
DNA-damage-inducible transcript 3.
   
 0.986
LOC107090721
CCAAT enhancer binding protein beta.
   
 0.965
eif2ak3
Eukaryotic translation initiation factor 2-alpha kinase 3.
     
 0.961
eif2s1
Eukaryotic translation initiation factor 2, subunit 1 alpha b.
     
 0.961
LOC107088346
Uncharacterized protein.
    
 0.920
atf4
Activating transcription factor 4b.
  
  
 
0.908
LOC107096074
Ribosomal protein S6 kinase.
     
 0.905
LOC107088073
Ribosomal protein S6 kinase.
     
 0.905
LOC107081812
Ribosomal protein S6 kinase.
     
 0.905
LOC107084094
Ribosomal protein S6 kinase.
     
 0.905
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.