ENSCVAP00000004469 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCVAP00000004469

Uncharacterized protein. (226 aa)

Predicted Functional Partners:

cat

0.760

treh

0.592

LOC107097351

0.555

yipf6

0.553

CLPB

0.538

hspa5

0.440

hspd1

0.417

sod3

0.412

sod1

0.412

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	ENSCVAP00000004469	ENSCVAP00000014804	ENSCVAP00000004469	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Uncharacterized protein.	0.538
CLPB	cat	ENSCVAP00000014804	ENSCVAP00000030597	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.696
CLPB	hspa5	ENSCVAP00000014804	ENSCVAP00000029709	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.800
CLPB	hspd1	ENSCVAP00000014804	ENSCVAP00000021521	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.	0.805
CLPB	sod1	ENSCVAP00000014804	ENSCVAP00000030681	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.450
CLPB	sod3	ENSCVAP00000014804	ENSCVAP00000009680	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.450
CLPB	treh	ENSCVAP00000014804	ENSCVAP00000020882	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Trehalase.	0.533
ENSCVAP00000004469	CLPB	ENSCVAP00000004469	ENSCVAP00000014804	Uncharacterized protein.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.538
ENSCVAP00000004469	LOC107097351	ENSCVAP00000004469	ENSCVAP00000000927	Uncharacterized protein.	Malate synthase-like.	0.555
ENSCVAP00000004469	cat	ENSCVAP00000004469	ENSCVAP00000030597	Uncharacterized protein.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.760
ENSCVAP00000004469	hspa5	ENSCVAP00000004469	ENSCVAP00000029709	Uncharacterized protein.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.440
ENSCVAP00000004469	hspd1	ENSCVAP00000004469	ENSCVAP00000021521	Uncharacterized protein.	Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.	0.417
ENSCVAP00000004469	sod1	ENSCVAP00000004469	ENSCVAP00000030681	Uncharacterized protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.412
ENSCVAP00000004469	sod3	ENSCVAP00000004469	ENSCVAP00000009680	Uncharacterized protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.412
ENSCVAP00000004469	treh	ENSCVAP00000004469	ENSCVAP00000020882	Uncharacterized protein.	Trehalase.	0.592
ENSCVAP00000004469	yipf6	ENSCVAP00000004469	ENSCVAP00000014977	Uncharacterized protein.	Protein YIPF.	0.553
LOC107097351	ENSCVAP00000004469	ENSCVAP00000000927	ENSCVAP00000004469	Malate synthase-like.	Uncharacterized protein.	0.555
LOC107097351	cat	ENSCVAP00000000927	ENSCVAP00000030597	Malate synthase-like.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.480
LOC107097351	yipf6	ENSCVAP00000000927	ENSCVAP00000014977	Malate synthase-like.	Protein YIPF.	0.486
cat	CLPB	ENSCVAP00000030597	ENSCVAP00000014804	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.696