STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspoSubcommissural organ spondin. (4847 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.759
LOC107098873
Cardiomyopathy associated 5.
    
 0.676
homez
Homeobox and leucine zipper encoding a.
    
 0.673
gle1
GLE1 RNA export mediator.
    
 0.671
gigyf1
GRB10 interacting GYF protein 1a.
      
 0.664
smg6
SMG6 nonsense mediated mRNA decay factor.
      
 0.662
trappc12
Trafficking protein particle complex 12.
      
 0.662
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 
 0.645
ENSCVAP00000015390
Uncharacterized protein.
   
 0.596
aaas
Achalasia, adrenocortical insufficiency, alacrimia.
    
 0.586
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.