LOC107083329 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107083329

Period circadian clock 3. (1324 aa)

Predicted Functional Partners:

LOC107090434

0.846

LOC107085871

0.841

timeless

0.825

LOC107089544

0.757

LOC107096663

0.757

fbxw11

0.757

LOC107099355

0.757

bhlhe41

0.717

LOC107104192

0.686

LOC107098020

0.686

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107083329	LOC107085871	ENSCVAP00000004498	ENSCVAP00000013597	Period circadian clock 3.	Cryptochrome circadian regulator 1a.	0.841
LOC107083329	LOC107089544	ENSCVAP00000004498	ENSCVAP00000019869	Period circadian clock 3.	Casein kinase 1, epsilon; Belongs to the protein kinase superfamily.	0.757
LOC107083329	LOC107090434	ENSCVAP00000004498	ENSCVAP00000009039	Period circadian clock 3.	Cryptochrome circadian regulator 2.	0.846
LOC107083329	LOC107096663	ENSCVAP00000004498	ENSCVAP00000025416	Period circadian clock 3.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.757
LOC107083329	LOC107098020	ENSCVAP00000004498	ENSCVAP00000019781	Period circadian clock 3.	Aryl hydrocarbon receptor nuclear translocator-like 1a.	0.686
LOC107083329	LOC107099355	ENSCVAP00000004498	ENSCVAP00000030030	Period circadian clock 3.	Casein kinase 1, delta b; Belongs to the protein kinase superfamily.	0.757
LOC107083329	LOC107104192	ENSCVAP00000004498	ENSCVAP00000005124	Period circadian clock 3.	Aryl hydrocarbon receptor nuclear translocator-like 2.	0.686
LOC107083329	bhlhe41	ENSCVAP00000004498	ENSCVAP00000004786	Period circadian clock 3.	Basic helix-loop-helix family, member e41.	0.717
LOC107083329	fbxw11	ENSCVAP00000004498	ENSCVAP00000026079	Period circadian clock 3.	F-box and WD repeat domain containing 11b.	0.757
LOC107083329	timeless	ENSCVAP00000004498	ENSCVAP00000000864	Period circadian clock 3.	Timeless circadian clock.	0.825
LOC107085871	LOC107083329	ENSCVAP00000013597	ENSCVAP00000004498	Cryptochrome circadian regulator 1a.	Period circadian clock 3.	0.841
LOC107085871	LOC107089544	ENSCVAP00000013597	ENSCVAP00000019869	Cryptochrome circadian regulator 1a.	Casein kinase 1, epsilon; Belongs to the protein kinase superfamily.	0.553
LOC107085871	LOC107096663	ENSCVAP00000013597	ENSCVAP00000025416	Cryptochrome circadian regulator 1a.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.553
LOC107085871	LOC107098020	ENSCVAP00000013597	ENSCVAP00000019781	Cryptochrome circadian regulator 1a.	Aryl hydrocarbon receptor nuclear translocator-like 1a.	0.705
LOC107085871	LOC107099355	ENSCVAP00000013597	ENSCVAP00000030030	Cryptochrome circadian regulator 1a.	Casein kinase 1, delta b; Belongs to the protein kinase superfamily.	0.553
LOC107085871	LOC107104192	ENSCVAP00000013597	ENSCVAP00000005124	Cryptochrome circadian regulator 1a.	Aryl hydrocarbon receptor nuclear translocator-like 2.	0.752
LOC107085871	bhlhe41	ENSCVAP00000013597	ENSCVAP00000004786	Cryptochrome circadian regulator 1a.	Basic helix-loop-helix family, member e41.	0.456
LOC107085871	timeless	ENSCVAP00000013597	ENSCVAP00000000864	Cryptochrome circadian regulator 1a.	Timeless circadian clock.	0.756
LOC107089544	LOC107083329	ENSCVAP00000019869	ENSCVAP00000004498	Casein kinase 1, epsilon; Belongs to the protein kinase superfamily.	Period circadian clock 3.	0.757
LOC107089544	LOC107085871	ENSCVAP00000019869	ENSCVAP00000013597	Casein kinase 1, epsilon; Belongs to the protein kinase superfamily.	Cryptochrome circadian regulator 1a.	0.553