STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098373Eomesodermin homolog a. (652 aa)    
Predicted Functional Partners:
foxh1
Forkhead box H1.
     
 0.529
LOC107088696
POU domain, class 5, transcription factor 3.
   
 0.501
mixl1
Mix paired-like homeobox.
   
 0.491
LOC107089788
T-box transcription factor Ta.
  
 
0.476
tbx19
Uncharacterized protein.
   
 
0.455
tbxt
T-box transcription factor Tb.
   
 
0.455
snai2
Snail family zinc finger 2.
    
 0.445
tbx21
T-box transcription factor 21.
   
 
0.437
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.429
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.