STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107097205Interferon regulatory factor 3. (463 aa)    
Predicted Functional Partners:
tbk1
TANK-binding kinase 1.
   
 0.994
Ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.991
irf7
Interferon regulatory factor 7.
     
0.982
LOC107092307
TRIF-NTD domain-containing protein.
    
 0.977
sting1
Transmembrane protein 173.
    
 0.976
Pin1
Peptidyl-prolyl cis-trans isomerase.
   
 0.971
crebbp
CREB binding protein b.
    
 0.964
LOC107083428
CREB binding protein a.
    
 0.964
LOC107092878
E1A binding protein p300 a.
    
 0.933
ep300
E1A binding protein p300 b.
    
 0.933
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.