STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoxd8Homeobox domain-containing protein. (105 aa)    
Predicted Functional Partners:
LOC107092064
Homeobox C5a.
  
 
0.772
hoxc6
Homeobox C6a.
   
 
0.764
LOC107093240
Homeobox domain-containing protein.
   
 
0.667
hoxb6
Homeobox B6b.
   
 
0.667
hoxd4
Homeobox D4a.
  
 
0.633
LOC107093237
Homeobox domain-containing protein.
  
 
0.589
hoxb5
Homeobox B5b.
   
 
0.584
HOXA7
Homeobox A7.
  
 
0.558
hoxc9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
0.538
LOC107093239
Homeobox B4a.
  
  
0.520
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.