STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095127IFI30 lysosomal thiol reductase. (238 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
   0.741
LOC107088074
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.681
pdia3
Protein disulfide-isomerase.
      
 0.669
ccdc15
Coiled-coil domain containing 15.
      
 0.661
auts2
Activator of transcription and developmental regulator AUTS2 a.
      
 0.633
LOC107102158
Scm polycomb group protein like 2.
      
 0.549
scml2
SAM domain-containing protein.
      
 0.549
LOC107089960
Zgc:110130.
    
 
 0.517
ENSCVAP00000026875
Uncharacterized protein.
   
   0.504
efhb
Uncharacterized protein.
    
   0.501
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.