STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snapc5Small nuclear RNA activating complex, polypeptide 5. (124 aa)    
Predicted Functional Partners:
snapc4
Uncharacterized protein.
    
 0.983
LOC107096334
Uncharacterized protein.
    
 0.968
LOC107093015
Uncharacterized protein.
    
 0.968
gtf2b
General transcription factor IIB.
    
 0.919
ENSCVAP00000002672
Uncharacterized protein.
    
 0.897
ENSCVAP00000021618
Uncharacterized protein.
    
 0.897
snapc2
Uncharacterized protein.
     
 0.873
gtf2a1
General transcription factor IIA, 1.
    
  0.829
gtf2a2
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
  0.829
ENSCVAP00000008657
Uncharacterized protein.
    
 0.760
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.