STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000004600WD_REPEATS_REGION domain-containing protein. (66 aa)    
Predicted Functional Partners:
nudc
NudC nuclear distribution protein.
   
 0.872
LOC107087868
Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.
    
 0.808
pafah1b3
Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit.
    
 0.808
ENSCVAP00000007651
Uncharacterized protein.
    
 0.736
dctn2
Dynactin 2 (p50).
    
 0.736
LOC107099035
Dynactin 1a.
    
 0.731
LOC107096795
Dynactin 1b.
    
 0.731
DYNC1I1
Dynein cytoplasmic 1 intermediate chain 1.
   
 0.722
LOC107091874
Dynein, cytoplasmic 1, intermediate chain 2b.
   
 0.722
LOC107104533
Dynein, cytoplasmic 1, intermediate chain 2a.
   
 0.722
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.