STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atxn3Ataxin 3. (345 aa)    
Predicted Functional Partners:
LOC107094393
Zgc:136908; Belongs to the AAA ATPase family.
   
 0.913
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.913
ENSCVAP00000021667
Ubiquitin-like domain-containing protein.
    
 0.912
rps27a
Ribosomal protein S27a.
    
 0.903
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.888
SPATA5
Spermatogenesis associated 5.
   
 0.888
Park2
RBR-type E3 ubiquitin transferase.
    
 0.874
ENSCVAP00000007456
Uncharacterized protein.
    
 0.874
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
    
 0.857
rad23b
RAD23 homolog B, nucleotide excision repair protein.
    
 0.857
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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