STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095634Myocardial zonula adherens protein. (722 aa)    
Predicted Functional Partners:
sh3rf3
SH3 domain containing ring finger 3.
   
  0.609
LOC107083873
Uncharacterized protein.
   
 0.597
smim20
Small integral membrane protein 20.
   
 0.597
gatd1
Glutamine amidotransferase like class 1 domain containing 1.
   
 0.597
ENSCVAP00000012785
Troponin T type 2a (cardiac).
   
 0.597
LOC107089160
Troponin T type 2b (cardiac).
   
 0.597
LOC107098111
Uncharacterized protein.
   
 0.597
TNNT1
Troponin T1, slow skeletal type.
   
 0.597
ENSCVAP00000022968
Uncharacterized protein.
   
 0.597
ENSCVAP00000025060
Uncharacterized protein.
   
 0.597
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.