STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107097923Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor. (974 aa)    
Predicted Functional Partners:
RELN
Reelin.
    
 0.849
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
    
 0.800
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.732
LOC107094062
DAB adaptor protein 1a.
    
 0.687
LOC107083615
DAB adaptor protein 1b.
    
 0.687
kank4
KN motif and ankyrin repeat domains 4.
    
 0.675
LOC107083601
ANK_REP_REGION domain-containing protein.
    
 0.674
faf1
Fas (TNFRSF6) associated factor 1.
      
 0.665
hdlbp
High density lipoprotein binding protein a.
   
  
 0.664
LOC107104443
Intersectin 2b.
    
  0.620
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.