STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srgap1SLIT-ROBO Rho GTPase activating protein 1b. (1007 aa)    
Predicted Functional Partners:
LOC107104443
Intersectin 2b.
   
0.786
ENSCVAP00000031587
Uncharacterized protein.
   
 0.786
ENSCVAP00000031602
Uncharacterized protein.
   
 0.786
itsn1
Intersectin 1 (SH3 domain protein).
   
0.666
LOC107096986
Protein phosphatase, Mg2+/Mn2+ dependent, 1H.
      
 0.663
LOC107095332
Growth arrest specific 7.
    
 0.541
gas7
Growth arrest-specific 7a.
    
 0.541
Tsen2
TSEN2 tRNA splicing endonuclease subunit.
    
   0.482
ENSCVAP00000027805
Uncharacterized protein.
    
   0.482
LOC107088342
WASP like actin nucleation promoting factor b.
   
 0.472
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.