Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107092286Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (665 aa)    
Predicted Functional Partners:
LOC107098104
Notch receptor 1b.
    
0.897
notch1
Notch receptor 1a.
    
0.897
LOC107083079
Notch receptor 3.
    
0.849
LOC107089721
Notch receptor 2.
    
0.849
mib1
Mindbomb E3 ubiquitin protein ligase 1.
   
 0.708
Eys
Uncharacterized protein.
    
 0.589
LOC107084905
E3 ubiquitin-protein ligase.
    
 0.582
fgf2
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 0.534
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.520
LOC107099483
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.520
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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