STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btaf1BTAF1 RNA polymerase II, B-TFIID transcription factor-associated. (1834 aa)    
Predicted Functional Partners:
drap1
DR1-associated protein 1 (negative cofactor 2 alpha).
    
 
 0.951
ENSCVAP00000008657
Uncharacterized protein.
    
 
 0.936
tbp
TATA box binding protein.
    
 
 0.936
Dr1
Down-regulator of transcription 1.
    
 
 0.915
tbpl1
TBP-like 1.
    
 
 0.872
LOC107087093
CBFD_NFYB_HMF domain-containing protein.
    
 
 0.857
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
  
 0.743
SUPT3H
SPT3 homolog, SAGA and STAGA complex component.
    
 
 0.700
gtf2b
General transcription factor IIB.
    
 
 0.693
taf11
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.655
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.