STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ranbp10Uncharacterized protein. (117 aa)    
Predicted Functional Partners:
wdr26
WD repeat domain 26b.
   
 
 0.912
armc8
Armadillo repeat containing 8.
   
 
 0.874
rmnd5b
Required for meiotic nuclear division 5 homolog B.
  
 
 0.858
LOC107080786
Protein yippee-like; Belongs to the yippee family.
   
 
 0.792
YPEL5
Protein yippee-like; Belongs to the yippee family.
   
 
 0.792
LOC107090700
Uncharacterized protein.
   
 
 0.769
gid8
GID complex subunit 8 homolog b (S. cerevisiae).
   
 
 0.769
GID4
GID complex subunit 4 homolog.
    
 
 0.746
GID4-2
GID complex subunit 4 homolog.
    
 
 0.746
LOC107104017
Muskelin 1, intracellular mediator containing kelch motifs.
    
 
 0.679
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.