STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIMP3TIMP metallopeptidase inhibitor 3. (213 aa)    
Predicted Functional Partners:
LOC107087577
ADAM metallopeptidase domain 17a.
    
 0.857
adam17
ADAM metallopeptidase domain 17b.
    
 0.857
mmp9
Matrix metallopeptidase 9.
   
 0.850
mmp2
Matrix metallopeptidase 2.
   
 0.653
LOC107083472
Matrix metallopeptidase 13b.
   
 0.653
LOC107083474
Matrix metallopeptidase 20b (enamelysin).
   
 0.653
LOC107083460
Matrix metallopeptidase 20a (enamelysin).
   
 0.653
mmp15
Matrix metallopeptidase 15b.
   
 0.639
LOC107087725
Matrix metallopeptidase 14b (membrane-inserted).
   
 0.639
LOC107093919
Matrix metallopeptidase 11.
   
 0.590
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.