STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000004791Si:ch211-10e2.1. (153 aa)    
Predicted Functional Partners:
spo11
SPO11 initiator of meiotic double stranded breaks.
   
 
 0.681
tex11
Testis expressed 11.
    
 
 0.673
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
      
 0.585
NEK9
NIMA related kinase 9.
      
 0.582
mlh3
MutL homolog 3 (E. coli).
      
 0.575
ENSCVAP00000027264
Zebrafish testis-expressed 38.
   
  
 0.566
msh4
MutS homolog 4.
   
 
 0.555
fancm
Uncharacterized protein.
      
 0.535
nsmce2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
   
 
 0.505
ENSCVAP00000030388
Si:ch1073-75f15.2.
    
 
 0.489
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.