Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC107097210Synaptotagmin Vb. (424 aa)    
Predicted Functional Partners:
LOC107086112
V-SNARE coiled-coil homology domain-containing protein.
   
 0.813
Vamp1
Zgc:92912.
   
 0.813
LOC107082578
Vesicle-associated membrane protein 2.
   
 0.813
ENSCVAP00000000394
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.799
LOC107102522
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.799
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.799
syt11
Synaptotagmin XIb.
   
 0.748
syt4
Synaptotagmin IV.
   
 0.748
ENSCVAP00000024301
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.737
Vamp3
V-SNARE coiled-coil homology domain-containing protein.
   
 0.713
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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