STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000004835Uncharacterized protein. (527 aa)    
Predicted Functional Partners:
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
    
 
 0.594
ifih1
Interferon induced with helicase C domain 1.
   
 
 0.557
ENSCVAP00000015184
TROVE domain-containing protein.
      
 0.547
exosc5
Exosome component 5.
    
 
 0.515
exosc7
Exosome component 7.
    
 
 0.502
znfx1
Zinc finger, NFX1-type containing 1.
   
  
 0.467
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58.
   
 
 0.462
LOC107090932
Nedd4 binding protein 1.
    
 
 0.442
LOC107091999
KH and NYN domain containing.
    
 
 0.442
Cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
  
  
 0.431
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.