STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095623Sortilin related VPS10 domain containing receptor 3b. (1214 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
     
 0.953
LOC107087023
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.520
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.513
igf2r
Insulin-like growth factor 2 receptor.
    
 0.510
psmb1
Proteasome subunit beta.
    
   0.480
psma8
Proteasome subunit alpha type.
    
   0.480
psma4
Proteasome subunit alpha type.
    
   0.480
psma1
Proteasome endopeptidase complex.
    
   0.480
LOC107096644
Uncharacterized protein.
    
 
 0.431
LOC107096636
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 
 0.431
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.