STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107094496Si:ch211-11n16.2. (655 aa)    
Predicted Functional Partners:
LOC107104443
Intersectin 2b.
    
 0.958
ENSCVAP00000031587
Uncharacterized protein.
    
 0.958
ENSCVAP00000031602
Uncharacterized protein.
    
 0.958
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
   
 0.807
stam2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.
   
 0.807
rps27a
Ribosomal protein S27a.
    
  0.774
LOC107085413
UEV domain-containing protein.
    
 0.765
tsg101
Tumor susceptibility 101a.
    
 0.737
ENSCVAP00000024543
Zgc:123278.
    
 0.737
vps28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
    
 0.669
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.