STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107093971Rhomboid 5 homolog 1b (Drosophila). (871 aa)    
Predicted Functional Partners:
kank2
KN motif and ankyrin repeat domains 2.
      
 0.665
nprl3
NPR3-like, GATOR1 complex subunit.
      
 0.664
lcmt1
Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.
      
 0.644
ngb
Neuroglobin; Belongs to the globin family.
   
  
 0.586
mpg
N-methylpurine DNA glycosylase.
     
 0.550
mgrn1
Mahogunin, ring finger 1b.
      
 0.545
LOC107086235
Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.531
LOC107086245
Aquaporin 8a, tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.531
prkcsh
Protein kinase C substrate 80K-H.
      
 0.489
LOC107087577
ADAM metallopeptidase domain 17a.
    
 0.488
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.