STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fermt3Fermitin family member 3b. (740 aa)    
Predicted Functional Partners:
LOC107103099
Filamin binding LIM protein 1.
    
 0.747
itgb8
Integrin beta; Belongs to the integrin beta chain family.
   
 0.670
ILK
Integrin linked kinase.
   
 
 0.655
LOC107087916
Uncharacterized protein.
   
 
 0.655
parvg
Parvin, gamma.
   
 
 0.592
LOC107086829
Uncharacterized protein.
   
  
 0.536
apbb1ip
Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein.
   
  
 0.536
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.523
itgb4
Integrin beta.
   
 0.518
ENSCVAP00000003761
Integrin beta; Belongs to the integrin beta chain family.
   
 0.477
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.