STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntrk2Tyrosine-protein kinase receptor. (672 aa)    
Predicted Functional Partners:
LOC107087023
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 0.786
LOC107097242
NGF domain-containing protein; Belongs to the NGF-beta family.
    
 0.747
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
   
 0.724
ntf3
Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.
    
 0.620
LOC107100916
Protein tyrosine phosphatase receptor type Sa.
   
 0.594
PTPRD
Protein tyrosine phosphatase receptor type D.
   
 0.594
LOC107083665
Protein tyrosine phosphatase receptor type Sa.
   
 0.594
LOC107098440
Protein tyrosine phosphatase receptor type Fa.
   
 0.594
LOC107085934
Protein tyrosine phosphatase receptor type Fb.
   
 0.594
LOC107094191
Uncharacterized protein.
   
 0.594
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.