STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107097916Uncharacterized protein. (451 aa)    
Predicted Functional Partners:
QKI
QKI, KH domain containing, RNA binding 2.
   
 
 0.813
LOC107094928
QKI, KH domain containing, RNA binding a.
   
 
 0.813
SUMF2
Sulfatase modifying factor 2.
    
   0.752
LOC107105121
Uncharacterized protein.
   
 
 0.716
PUF60
Poly-U binding splicing factor b.
   
 
 0.716
khsrp
KH-type splicing regulatory protein.
   
   0.712
fubp1
Far upstream element (FUSE) binding protein 1.
   
   0.712
khdc4
Uncharacterized protein.
      
 0.608
dazap1
DAZ associated protein 1.
   
 
 0.591
exosc2
Exosome component 2.
   
  0.585
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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