STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107083859Troponin I type 2b (skeletal, fast), tandem duplicate 1. (177 aa)    
Predicted Functional Partners:
LOC107103666
Si:rp71-17i16.4.
   
 0.935
ENSCVAP00000025588
EF-hand domain-containing protein.
   
 0.906
LOC107093602
Troponin T type 3a (skeletal, fast).
  
 0.857
LOC107083873
Uncharacterized protein.
   
 0.827
LOC107098111
Uncharacterized protein.
  
 0.821
LOC107099558
Uncharacterized protein.
  
 0.818
LOC107089160
Troponin T type 2b (cardiac).
  
 0.816
ENSCVAP00000022968
Uncharacterized protein.
  
 0.816
ENSCVAP00000025060
Uncharacterized protein.
  
 0.816
LOC107088037
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.813
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.