STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctnnal1Catenin (cadherin-associated protein), alpha-like 1. (757 aa)    
Predicted Functional Partners:
tlnrd1
Talin rod domain containing 1.
   
 0.668
ENSCVAP00000017881
I/LWEQ domain-containing protein.
   
 0.668
LOC107102749
Talin 1.
   
 0.668
TLN2
Talin 2a.
   
 0.668
LOC107081254
FERM_f0 domain-containing protein.
   
 0.668
tln2
Talin 2b.
   
 0.668
CTNND1
Catenin delta 1.
   
 0.657
ctnnd1
Catenin (cadherin-associated protein), delta 1.
   
 0.657
pcdh9
Protocadherin 9.
    
 0.602
cdh16
Cadherin 16, KSP-cadherin.
    
 0.597
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.