LOC107082661 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107082661

Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (390 aa)

Predicted Functional Partners:

LOC107099597

0.609

GLRB

0.603

gphn

0.425

ENSCVAP00000019685

0.425

ENSCVAP00000032780

0.425

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000019685	ENSCVAP00000032780	ENSCVAP00000019685	ENSCVAP00000032780	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	MoCF_biosynth domain-containing protein.	0.915
ENSCVAP00000019685	GLRB	ENSCVAP00000019685	ENSCVAP00000022024	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.704
ENSCVAP00000019685	LOC107082661	ENSCVAP00000019685	ENSCVAP00000005078	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.425
ENSCVAP00000019685	LOC107099597	ENSCVAP00000019685	ENSCVAP00000025201	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.704
ENSCVAP00000032780	ENSCVAP00000019685	ENSCVAP00000032780	ENSCVAP00000019685	MoCF_biosynth domain-containing protein.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.915
ENSCVAP00000032780	GLRB	ENSCVAP00000032780	ENSCVAP00000022024	MoCF_biosynth domain-containing protein.	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.704
ENSCVAP00000032780	LOC107082661	ENSCVAP00000032780	ENSCVAP00000005078	MoCF_biosynth domain-containing protein.	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.425
ENSCVAP00000032780	LOC107099597	ENSCVAP00000032780	ENSCVAP00000025201	MoCF_biosynth domain-containing protein.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.704
GLRB	ENSCVAP00000019685	ENSCVAP00000022024	ENSCVAP00000019685	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.704
GLRB	ENSCVAP00000032780	ENSCVAP00000022024	ENSCVAP00000032780	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	MoCF_biosynth domain-containing protein.	0.704
GLRB	LOC107082661	ENSCVAP00000022024	ENSCVAP00000005078	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.603
GLRB	gphn	ENSCVAP00000022024	ENSCVAP00000002198	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.704
LOC107082661	ENSCVAP00000019685	ENSCVAP00000005078	ENSCVAP00000019685	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.425
LOC107082661	ENSCVAP00000032780	ENSCVAP00000005078	ENSCVAP00000032780	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	MoCF_biosynth domain-containing protein.	0.425
LOC107082661	GLRB	ENSCVAP00000005078	ENSCVAP00000022024	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Glycine receptor beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.603
LOC107082661	LOC107099597	ENSCVAP00000005078	ENSCVAP00000025201	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.609
LOC107082661	gphn	ENSCVAP00000005078	ENSCVAP00000002198	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.425
LOC107099597	ENSCVAP00000019685	ENSCVAP00000025201	ENSCVAP00000019685	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.704
LOC107099597	ENSCVAP00000032780	ENSCVAP00000025201	ENSCVAP00000032780	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	MoCF_biosynth domain-containing protein.	0.704
LOC107099597	LOC107082661	ENSCVAP00000025201	ENSCVAP00000005078	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.609