STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cishUncharacterized protein. (227 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.861
CUL5
Cullin 5; Belongs to the cullin family.
   
 0.811
cul5
Cullin 5; Belongs to the cullin family.
   
 0.811
ELOB
Elongin B.
    
 0.787
LOC107084765
Elongin B.
    
 0.787
rnf7
Ring finger protein 7.
   
 0.763
cul2
Cullin 2; Belongs to the cullin family.
   
 0.647
LOC107096550
Erythropoietin receptor.
    
 
 0.615
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.565
commd1
Copper metabolism (Murr1) domain containing 1.
    
 0.553
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.