STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107101988Testis associated actin remodelling kinase 2. (597 aa)    
Predicted Functional Partners:
LOC107101152
Parvin, alpha a.
     
 0.640
parvb
Parvin, beta.
     
 0.640
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.568
LOC107090723
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.550
traf7
TNF receptor-associated factor 7.
   
 0.491
LOC107104443
Intersectin 2b.
   
 0.474
ENSCVAP00000031587
Uncharacterized protein.
   
 0.474
ENSCVAP00000031602
Uncharacterized protein.
   
 0.474
spry4
Sprouty homolog 4 (Drosophila).
    
 0.461
LOC107091989
Receptor-interacting serine-threonine kinase 3.
  
 
0.458
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.