STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107104192Aryl hydrocarbon receptor nuclear translocator-like 2. (579 aa)    
Predicted Functional Partners:
LOC107100965
Cryptochrome DASH.
   
 0.831
LOC107093492
Uncharacterized protein.
   
0.806
CLOCK
Clock circadian regulator a.
   
0.806
LOC107087869
Neuronal PAS domain protein 2.
   
0.806
LOC107087809
Uncharacterized protein.
    
0.770
LOC107090434
Cryptochrome circadian regulator 2.
   
 0.770
npas4
Neuronal PAS domain protein 4a.
    
 0.770
LOC107085871
Cryptochrome circadian regulator 1a.
   
 0.752
LOC107082759
Cryptochrome circadian regulator 5.
   
 0.714
LOC107103492
Cryptochrome circadian regulator 3a.
   
 0.697
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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