STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ca6Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family. (538 aa)    
Predicted Functional Partners:
LOC107089318
Uncharacterized protein.
    
 
 0.675
lmnb1
Lamin B1; Belongs to the intermediate filament family.
    
 
 0.671
nxf1
Zgc:153681.
      
 0.669
rpf2
Ribosome production factor 2 homolog.
   
 
 0.591
ca10
Carbonic anhydrase Xa; Belongs to the alpha-carbonic anhydrase family.
  
   
0.564
LOC107088469
Liver-enriched gene 1, tandem duplicate 1.
   
  
 0.563
rrs1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.515
ENSCVAP00000000594
Neurexophilin; May be signaling molecules that resemble neuropeptides.
   
  
 0.487
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.484
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.482
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.