STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmp15Matrix metallopeptidase 15b. (443 aa)    
Predicted Functional Partners:
LOC107083192
TIMP metallopeptidase inhibitor 2b.
   
 0.893
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.853
adamts1
ADAM metallopeptidase with thrombospondin type 1 motif, 1.
      
 0.664
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.639
LOC107082853
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.639
ENSCVAP00000024539
Connexin 35.4.
      
 0.639
timp4
TIMP metallopeptidase inhibitor 4.
    
 0.614
LOC107083472
Matrix metallopeptidase 13b.
  
0.576
LOC107083474
Matrix metallopeptidase 20b (enamelysin).
  
0.573
LOC107083460
Matrix metallopeptidase 20a (enamelysin).
  
0.565
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.