STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107103743Si:dkey-79d12.5. (279 aa)    
Predicted Functional Partners:
cnot8
CCR4-NOT transcription complex, subunit 8.
    
 0.628
LOC107082365
CCR4-NOT transcription complex, subunit 7.
    
 0.628
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 0.613
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 0.594
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 0.572
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.562
cnot4
CCR4-NOT transcription complex, subunit 4a.
     
 0.484
cnot3
CCR4-NOT transcription complex, subunit 3a.
    
 0.476
LOC107089013
CCR4-NOT transcription complex, subunit 3b.
    
 0.476
LOC107089476
CCR4-NOT transcription complex, subunit 2.
    
  0.464
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.