STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pald1Phosphatase domain containing paladin 1a. (891 aa)    
Predicted Functional Partners:
chst8
Carbohydrate sulfotransferase.
      
 0.722
LOC107089539
Zinc finger protein 646.
      
 0.672
ENSCVAP00000010822
Carbohydrate sulfotransferase.
      
 0.671
LOC107100848
ADAM metallopeptidase with thrombospondin type 1 motif, 14.
   
  
 0.661
LOC107091590
Acyl-CoA binding domain containing 4.
      
 0.658
depdc4
Si:ch211-265o23.1.
      
 0.646
tcp11
Uncharacterized protein.
      
 0.646
LOC107097655
Syntaxin 1B; Belongs to the syntaxin family.
      
 0.639
Chst2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.635
parp2
Poly [ADP-ribose] polymerase.
      
 0.607
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.