STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem53Transmembrane protein 53. (286 aa)    
Predicted Functional Partners:
LOC107085989
Leucine rich repeat containing 4.1.
      
 0.672
lrrc4
Leucine rich repeat containing 4.2.
      
 0.664
rbm28
RNA binding motif protein 28.
      
 0.664
ENSCVAP00000029471
Si:dkey-31f5.11.
   
  
 0.642
acbd6
Acyl-CoA binding domain containing 6.
      
 0.638
Tmem223
Transmembrane protein 223.
      
 0.626
tmem147
Transmembrane protein 147.
      
 0.567
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
      
 0.551
dmap1
DNA methyltransferase 1 associated protein 1.
      
 0.542
prrt4
Uncharacterized protein.
   
  
 0.485
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.