STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098333TUB like protein 4b; Belongs to the TUB family. (1806 aa)    
Predicted Functional Partners:
eprs1
Glutamyl-prolyl-tRNA synthetase.
      
 0.620
rnf7
Ring finger protein 7.
    
  0.619
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.581
cul5
Cullin 5; Belongs to the cullin family.
    
 0.581
LOC107100233
TIP120 domain-containing protein.
   
 
 0.523
cand1
Cullin-associated and neddylation-dissociated 1.
   
 
 0.523
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
  0.509
ELOB
Elongin B.
    
  0.491
LOC107084765
Elongin B.
    
  0.491
serac1
Serine active site containing 1.
      
 0.483
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.