STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpaa1Glycosylphosphatidylinositol anchor attachment 1. (615 aa)    
Predicted Functional Partners:
pigs
Phosphatidylinositol glycan anchor biosynthesis, class S.
   
 0.999
pigt
Phosphatidylinositol glycan anchor biosynthesis, class T.
   
 0.999
pigk
GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.
    
 0.999
pigu
Phosphatidylinositol glycan anchor biosynthesis, class U.
   
 0.998
pigo
Phosphatidylinositol glycan anchor biosynthesis, class O.
   
 0.965
pgap1
GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.
    
 0.965
pigf
Phosphatidylinositol glycan anchor biosynthesis, class F.
     
 0.924
ENSCVAP00000006154
PGRP domain-containing protein.
   
 0.898
ENSCVAP00000023924
PGRP domain-containing protein.
   
 0.898
LOC107102760
Uncharacterized protein.
   
 0.898
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.