STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107097166Rab-GAP TBC domain-containing protein. (812 aa)    
Predicted Functional Partners:
LOC107099433
Trafficking protein particle complex 8.
    
 
 0.545
LOC107090965
Unc-51 like autophagy activating kinase 1.
    
  0.517
ulk1
Unc-51 like autophagy activating kinase 1a.
    
  0.517
ulk2
Unc-51 like autophagy activating kinase 2.
    
  0.517
rab11a
RAB11a, member RAS oncogene family.
    
 0.507
LOC107088590
Uncharacterized protein.
    
 0.507
LOC107095311
RAB11B, member RAS oncogene family, b.
    
 0.507
LOC107095305
Uncharacterized protein.
    
 0.507
LOC107104048
RAB11a, member RAS oncogene family, like.
    
 0.507
rab25
RAB25, member RAS oncogene family b.
    
 0.502
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.