STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
foxg1Forkhead box G1a. (402 aa)    
Predicted Functional Partners:
LOC107081655
Uncharacterized protein.
    
 
 0.617
LOC107099240
Methyl CpG binding protein 2.
    
 0.571
sirt1
Sirtuin 1.
    
 0.566
LOC107100830
TLE family member 5, transcriptional modulator.
    
 
 0.540
ENSCVAP00000009367
Protein kinase domain-containing protein.
    
 0.536
ENSCVAP00000009379
SH3 domain-containing protein.
    
 0.536
sim1
Uncharacterized protein.
    
 
 0.501
ENSCVAP00000026471
Uncharacterized protein.
    
 
 0.501
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
   
 0.479
sirt2
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase.
    
 0.475
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.