STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccdc62Uncharacterized protein. (277 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
      
 0.671
pick1
Protein interacting with prkca 1.
      
 0.663
dpy19l1
Dpy-19-like 1, like (H. sapiens).
      
 0.643
tekt4
Tektin 4.
      
 0.583
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
      
 0.556
gopc
Golgi-associated PDZ and coiled-coil motif containing.
      
 0.483
acmsd
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily.
      
 0.483
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
      
 0.478
LOC107089961
ArfGAP with FG repeats 1b.
      
 0.461
agfg1
ArfGAP with FG repeats 1a.
      
 0.461
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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