STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slf1SMC5-SMC6 complex localization factor 1. (877 aa)    
Predicted Functional Partners:
bard1
BRCA1 associated RING domain 1.
   
0.996
cdc45
CDC45 cell division cycle 45 homolog (S. cerevisiae).
   
 
 0.996
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
    
 0.996
nbn
Nibrin.
    
 0.990
rad1
RAD1 homolog (S. pombe).
    
 0.986
rad17
RAD17 checkpoint clamp loader component.
  
 0.985
atrip
Uncharacterized protein.
    
 0.982
dna2
DNA replication helicase/nuclease 2.
   
 0.981
rfc4
Replication factor C (activator 1) 4.
  
 0.980
ENSCVAP00000005887
XPGI domain-containing protein.
   
 0.979
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.