STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGFLAMEGF like, fibronectin type III and laminin G domains. (914 aa)    
Predicted Functional Partners:
fgf10
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 0.735
LOC107090395
Peptidase S72 domain-containing protein.
   
 0.727
LOC107102255
Dystroglycan 1.
   
 0.727
LOC107095815
Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.
    
 0.694
ENSCVAP00000001543
Katanin p60 subunit A-like 2.
    
 
 0.693
nipbl
Nipped-B protein.
   
 
 0.675
LOC107095110
Potassium channel, subfamily V, member 2a; Belongs to the potassium channel family.
    
 0.657
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
    
 0.637
rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.627
rps27a
Ribosomal protein S27a.
    
  0.626
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.