STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pex1Peroxisomal biogenesis factor 1. (1234 aa)    
Predicted Functional Partners:
ENSCVAP00000028582
Uncharacterized protein.
  
0.997
zfand4
Zinc finger, AN1-type domain 4.
   
 0.965
ubxn7
UBX domain protein 7.
   
 0.958
pex13
Peroxisomal biogenesis factor 13.
    
 0.944
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
 0.935
pex14
Peroxisomal biogenesis factor 14.
    
 0.934
pex10
Peroxisomal biogenesis factor 10.
   
 0.928
fam185a
Family with sequence similarity 185 member A.
    
 0.883
pex19
Peroxisomal biogenesis factor 19.
    
 0.850
LOC107100351
Peroxisomal biogenesis factor 5-like b.
   
 0.845
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.