STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col10a1Collagen, type X, alpha 1b. (657 aa)    
Predicted Functional Partners:
LOC107083472
Matrix metallopeptidase 13b.
   
 0.579
LOC107096191
Tyrosine-protein kinase.
    
 0.566
abhd10
Transgelin 3b.
      
 0.536
gdf5
Growth differentiation factor 5.
    
 
 0.508
runx2
Runt-related transcription factor.
     
 0.504
LOC107086845
Cathepsin K; Belongs to the peptidase C1 family.
     
 0.501
nt5dc1
5'-nucleotidase domain containing 1.
      
 0.493
ENSCVAP00000006813
Uncharacterized protein.
 
   
  0.474
LOC107098653
Olfactomedin-like 3a.
      
 0.451
pcolce2
Procollagen C-endopeptidase enhancer 2b.
   
 0.414
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.