STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNF830Zinc finger protein 830. (336 aa)    
Predicted Functional Partners:
ppie
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
   
 0.985
aqr
Aquarius intron-binding spliceosomal factor.
    
 0.982
prpf19
Pre-mRNA processing factor 19.
    
 0.977
snw1
SNW domain containing 1.
    
 0.977
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.977
xab2
XPA binding protein 2.
    
 0.970
ENSCVAP00000025291
Uncharacterized protein.
    
   0.953
sf3b2
Splicing factor 3b, subunit 2.
    
   0.951
LOC107103552
ISY1 splicing factor homolog.
    
  0.946
prcc
Proline rich mitotic checkpoint control factor.
   
 
 0.930
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.