STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107101972Tetraspanin. (238 aa)    
Predicted Functional Partners:
ptgfrn
Uncharacterized protein.
    
 
 0.749
tspan8
CD9 molecule b; Belongs to the tetraspanin (TM4SF) family.
    
 
0.676
LOC107102394
Tetraspanin.
    
 
0.676
LOC107094830
Uncharacterized protein.
    
 0.581
cd63
Tetraspanin.
    
 
0.573
ENSCVAP00000022427
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
      
 0.545
LOC107100621
Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
      
 0.532
igsf8
Immunoglobulin superfamily, member 8.
    
 
 0.512
LOC107095104
Fin bud initiation factor b.
      
 0.483
LOC107082188
Uncharacterized protein.
    
 0.443
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.